IL_2ZJP_051

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UGAGG*CGCAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2ZJP_051 not in the Motif Atlas

Geometric match to IL_7A0S_049

Geometric discrepancy: 0.1999

The information below is about IL_7A0S_049

Detailed Annotation

tSH-tWH-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.2

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

19

Unit IDs

2ZJP|1|X|U|1370
2ZJP|1|X|G|1371
2ZJP|1|X|A|1372
2ZJP|1|X|G|1373
2ZJP|1|X|G|1374
*
2ZJP|1|X|C|1383
2ZJP|1|X|G|1384
2ZJP|1|X|C|1385
2ZJP|1|X|A|1386
2ZJP|1|X|G|1387

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 2

50S RIBOSOMAL PROTEIN L34

Chain A

50S RIBOSOMAL PROTEIN L2

Chain U

50S RIBOSOMAL PROTEIN L28