IL_2ZJP_058

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

CAAG*UCAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2ZJP_058 not in the Motif Atlas

Geometric match to IL_4WF9_087

Geometric discrepancy: 0.183

The information below is about IL_4WF9_087

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.3

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

47

Unit IDs

2ZJP|1|X|C|1491
2ZJP|1|X|A|1492
2ZJP|1|X|A|1493
2ZJP|1|X|G|1494
*
2ZJP|1|X|U|1530
2ZJP|1|X|C|1531
2ZJP|1|X|A|1532
2ZJP|1|X|G|1533

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains