IL_2ZJP_060

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GGUCA*UAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2ZJP_060 not in the Motif Atlas

Geometric match to IL_5J7L_009

Geometric discrepancy: 0.3367

The information below is about IL_5J7L_009

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

2ZJP|1|X|G|1503
2ZJP|1|X|G|1504
2ZJP|1|X|U|1505
2ZJP|1|X|C|1506
2ZJP|1|X|A|1507
*
2ZJP|1|X|U|1515
2ZJP|1|X|A|1516
2ZJP|1|X|C|1517

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain A

50S RIBOSOMAL PROTEIN L2