IL_2ZJP_100

3D structure

PDB id

2ZJP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Thiopeptide antibiotic Nosiheptide bound to the large ribosomal subunit of Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

2ZJP|1|X|A|2745

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2ZJP_100 not in the Motif Atlas

Homologous match to IL_7A0S_098

Geometric discrepancy: 0.0962

The information below is about IL_7A0S_098

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_91079.1

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

8

Unit IDs

2ZJP|1|X|G|2717
2ZJP|1|X|A|2718
2ZJP|1|X|U|2719
2ZJP|1|X|A|2720
2ZJP|1|X|A|2721
2ZJP|1|X|C|2722
*
2ZJP|1|X|G|2742
2ZJP|1|X|G|2743
2ZJP|1|X|A|2744
2ZJP|1|X|A|2745
2ZJP|1|X|G|2746
2ZJP|1|X|C|2747

Current chains

Chain X

RIBOSOMAL 23S RNA

Nearby chains

Chain 4

50S RIBOSOMAL PROTEIN L36

Chain E

50S RIBOSOMAL PROTEIN L6

Chain G

50S RIBOSOMAL PROTEIN L13