IL_2ZJR_001

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

GUGGAUG*CUGAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44067.2

Basepair signature

cWW-L-R-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

2ZJR|1|X|G|24
2ZJR|1|X|U|25
2ZJR|1|X|G|26
2ZJR|1|X|G|27
2ZJR|1|X|A|28
2ZJR|1|X|U|29
2ZJR|1|X|G|30
*
2ZJR|1|X|C|520
2ZJR|1|X|U|521
2ZJR|1|X|G|522
2ZJR|1|X|A|523
2ZJR|1|X|A|524
2ZJR|1|X|A|525
2ZJR|1|X|C|526

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain P

50S ribosomal protein L22

Chain Z

50S ribosomal protein L32