IL_2ZJR_014

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

2ZJR|1|X|G|814, 2ZJR|1|X|G|818

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53635.2

Basepair signature

cWW-R-tHW-tHW-tWW-cWW

Number of instances in this motif group

6

Unit IDs

2ZJR|1|X|G|687
2ZJR|1|X|A|688
2ZJR|1|X|A|689
2ZJR|1|X|A|690
2ZJR|1|X|C|691
*
2ZJR|1|X|G|812
2ZJR|1|X|A|813
2ZJR|1|X|G|814
2ZJR|1|X|A|815
2ZJR|1|X|U|816
2ZJR|1|X|A|817
2ZJR|1|X|G|818
2ZJR|1|X|C|819

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain C

50S ribosomal protein L4

Chain I

50S ribosomal protein L15