Motif IL_53635.2 Version IL_53635.2 of this group appears in releases 0.7 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-9 | 3-8 | 4-7 | 5-6 | 5-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2ZJR_014 | 2ZJR | 0.2919 | 2 | X | LSU rRNA | G | 687 | A | 688 | A | 689 | A | 690 | C | 691 | * | G | 812 | A | 813 | A | 815 | U | 816 | A | 817 | C | 819 | cWW | tHW | ntWW | ntWW | cWW | ntWW | |
| 2 | IL_3U5H_029 | 3U5H | 0.3617 | 2 | 5 | 25S rRNA | G | 805 | A | 806 | A | 807 | A | 808 | G | 809 | * | C | 931 | U | 932 | G | 934 | U | 935 | A | 936 | C | 938 | cWW | tHW | ntHH | cWW | |||
| 3 | IL_4A1B_035 | 4A1B | 0.2349 | 2 | 1 | 26S RRNA | G | 830 | A | 831 | A | 832 | A | 833 | G | 834 | * | C | 956 | U | 957 | G | 959 | U | 960 | A | 961 | C | 963 | cWW | tHW | ncHH | cWW | |||
| 4 | IL_2QBG_021 | 2QBG | 0.0821 | 2 | B | 23S rRNA | G | 674 | A | 675 | A | 676 | A | 677 | C | 678 | * | G | 799 | A | 800 | A | 802 | U | 803 | A | 804 | C | 806 | cWW | tHW | tHW | tWW | cWW | ||
| 5 | IL_3V2F_018 | 3V2F | 0.0000 | 2 | A | 23S Ribosomal RNA | G | 674 | A | 675 | A | 676 | A | 677 | C | 678 | * | G | 799 | A | 800 | A | 802 | U | 803 | A | 804 | C | 806 | cWW | tHW | tHW | tWW | cWW | ||
| 6 | IL_1S72_025 | 1S72 | 0.2145 | 2 | 0 | LSU rRNA | G | 765 | A | 766 | A | 767 | U | 768 | C | 769 | * | G | 892 | C | 893 | A | 895 | C | 896 | A | 897 | C | 899 | cWW | tHW | tHW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAAAC*GAGAUAGC | 3 |
| GAAAG*CUAGUAGC | 2 |
| GAAUC*GCAACAGC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AAA*AGAUAG | 3 |
| AAA*UAGUAG | 2 |
| AAU*CAACAG | 1 |
Release history
| Release | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 |
|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_53635.2 | Only in the parent motif |
|---|---|---|---|
| IL_53635.1 Compare | IL_1S72_025, IL_3U5H_029, IL_4A1B_035, IL_2QBG_021, IL_2ZJR_014 | IL_3V2F_018 | IL_3UXR_018 |
Children motifs
| Child motif | Common motif instances | Only in IL_53635.2 | Only in the child motif |
|---|---|---|---|
| IL_53635.3 Compare | IL_1S72_025, IL_3V2F_018, IL_4A1B_035, IL_2QBG_021, IL_3U5H_029 | IL_2ZJR_014 | IL_4IOA_014 |
- Annotations
- Basepair signature
- cWW-R-tHW-tHW-tWW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.23 | Max 0.37
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