IL_2ZJR_017

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

UGAAAC*GCGGAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93568.1

Basepair signature

cWW-tSH-tHS-L-R-R-L-cWW

Number of instances in this motif group

4

Unit IDs

2ZJR|1|X|U|716
2ZJR|1|X|G|717
2ZJR|1|X|A|718
2ZJR|1|X|A|719
2ZJR|1|X|A|720
2ZJR|1|X|C|721
*
2ZJR|1|X|G|736
2ZJR|1|X|C|737
2ZJR|1|X|G|738
2ZJR|1|X|G|739
2ZJR|1|X|A|740
2ZJR|1|X|G|741

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain A

50S ribosomal protein L2