IL_2ZJR_027

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

GA*UCC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_44540.2

Basepair signature

cWW-cSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

2ZJR|1|X|G|875
2ZJR|1|X|A|876
*
2ZJR|1|X|U|925
2ZJR|1|X|C|926
2ZJR|1|X|C|927

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain J

50S ribosomal protein L16

Chain S

50S ribosomal protein L25

Chain T

50S ribosomal protein L27

Chain Y

5S ribosomal RNA; 5S rRNA