IL_2ZJR_032

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

CUAAG*CGAAG

Length

10 nucleotides

Bulged bases

2ZJR|1|X|A|1167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93424.2

Basepair signature

cWW-tSH-R-tHW-cWW

Number of instances in this motif group

22

Unit IDs

2ZJR|1|X|C|1009
2ZJR|1|X|U|1010
2ZJR|1|X|A|1011
2ZJR|1|X|A|1012
2ZJR|1|X|G|1013
*
2ZJR|1|X|C|1164
2ZJR|1|X|G|1165
2ZJR|1|X|A|1166
2ZJR|1|X|A|1167
2ZJR|1|X|G|1168

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain N

50S ribosomal protein L20

Chain O

50S ribosomal protein L21

Chain W

50S ribosomal protein L30

Chain Y

5S ribosomal RNA; 5S rRNA