#SLoop idPDBDisc#Non-coreAnnotationChain(s)Standardized name 1 2 3 4break 5 6 7 8 91-92-72-83-64-5
1 IL_4A1B_0674A1B0.26732 126S RRNAC1610A1611A1612G1615*C1558U1559A1560A1561G1562cWWtSHtHWcWW
2 IL_3U5H_0693U5H0.22492 525S rRNAC1585G1586A1587G1590*C1532U1533A1534A1535G1536cWWtSHtHWcWW
3 IL_1S72_0521S720.20403 0 LSU rRNAC1483G1484A1485G1489*C1456U1457A1458A1459G1460cWWtSHtHWcWW
4 IL_2QBG_0542QBG0.00001 B23S rRNAC1417G1418A1419G1421*C1577U1578A1579A1580G1581cWWtSHtHWcWW
5 IL_3V2F_0523V2F0.12521 A23S Ribosomal RNAC1417G1418A1419G1421*C1577U1578A1579A1580G1581cWWtSHtHWcWW
6 IL_3V2F_0493V2F0.14471 A23S Ribosomal RNAC1376G1377A1378G1380*C1351U1352A1353A1354G1355cWWtSHtHWcWW
7 IL_2QBG_0512QBG0.14861 B23S rRNAC1376G1377A1378G1380*C1351U1352A1353A1354G1355cWWtSHtHWcWW
8 IL_1S72_0381S720.19401 0 LSU rRNAC1257G1258A1259A1261*U1095U1096A1097A1098G1099cWWtSHtHWcWW
9 IL_3V2F_0363V2F0.21741 A23S Ribosomal RNAC1153G1154A1155G1157*C998U999A1000A1001G1002cWWtSHtHWcWW
10 IL_2QBG_0362QBG0.19631 B23S rRNAC1153G1154A1155G1157*C998U999A1000A1001G1002cWWtSHtHWcWW
11 IL_2ZJR_0322ZJR0.23081 X LSU rRNAC1164G1165A1166G1168*C1009U1010A1011A1012G1013cWWtSHtHWcWW
12 IL_2XXA_0142XXA0.29123 G SSRP RNAC31G32A33U37*A62U63A64A65G66cWWntSHntHWcWW
13 IL_3U5H_1263U5H0.24381 525S rRNAA3127G3128A3129U3131*A3103U3104U3105A3106U3107cWWtSHtHWcWW
14 IL_4A1B_1224A1B0.25341 126S RRNAA3116G3117A3118U3120*A3092U3093U3094A3095U3096cWWtSHntHWcWW
15 IL_2ZJR_0522ZJR0.33771 X LSU rRNAU1431G1432A1433G1435*C1593U1594A1595A1596A1597cWWtSHtHWcWW
16 IL_2XZM_0072XZM0.54071 A18S RRNAU63U64A66G67*C78G79A80A81A82cWWntWHntHScWW
17 IL_3U5H_0243U5H0.43740 525S rRNAG725G726G727G728*U741G742C743A744C745cWWtSHntHScWW
18 IL_3U5H_1243U5H0.44762 525S rRNAU3054U3055U3057G3059*C3084G3085A3086A3087G3088cWWcWW
19 IL_1S72_0921S720.40171 0 LSU rRNAU2724G2725A2727C2728*G2754G2755U2756A2757G2758cWWtSHcWW
20 IL_3V2F_0573V2F0.52130 A23S Ribosomal RNAU1518G1519G1520U1523*A1469G1470A1471A1472G1473cWWtSHcWW
21 IL_4A1B_1264A1B0.50560 126S RRNAU3212G3213A3214C3215*G3195G3196A3197A3198G3199cWWntSHcWW
22 IL_1X8W_0061X8W0.48041 ATetrahymena ribozyme RNAU253G254C255G257*C216C217A218A219G220cWWntSHcWW

3D structures

Complete motif including flanking bases
SequenceCounts
CGAAG*CUAAG3
CGAUG*CUAAG2
CUAAG*CGAAG2
AGAAU*AUUAU2
CAAAAG*CUAAG1
CGAAAG*CUAAG1
CGAAAUG*CUAAG1
CGAGA*UUAAG1
CGAACCU*AUAAG1
UGAUG*CUAAA1
UUCAG*CGAAA1
GGGG*UGCAC1
UUUUUG*CGAAG1
UGUAC*GGUAG1
AGAAG*UGGU1
UGAC*GGAAG1
UGCAG*CCAAG1
Non-Watson-Crick part of the motif
SequenceCounts
GAA*UAA3
GAU*UAA3
UAA*GAA2
GAA*UUA2
AAAA*UAA1
GAAA*UAA1
GAAAU*UAA1
GAG*UAA1
GAACC*UAA1
UCA*GAA1
GG*GCA1
UUUU*GAA1
GUA*GUA1
GAA*GG1
GA*GAA1
GCA*CAA1

Release history

Release0.70.80.90.100.110.121.0
Date2013-02-172013-02-172013-02-172013-02-172013-02-172013-02-172013-03-04
StatusUpdated, 1 parentExact matchExact matchExact matchExact matchExact matchExact match

Parent motifs

Children motifs

Child motifCommon motif instancesOnly in IL_93424.2Only in the child motif
IL_93424.3
Compare
IL_2QBG_036, IL_2XZM_007, IL_1S72_052, IL_2QBG_054, IL_1S72_038, IL_3U5H_069, IL_1X8W_006, IL_2QBG_051, IL_1S72_092, IL_3V2F_057, IL_3V2F_036, IL_3U5H_024, IL_3V2F_052, IL_3U5H_124, IL_4A1B_122, IL_3U5H_126, IL_2XXA_014, IL_4A1B_126, IL_3V2F_049, IL_4A1B_067IL_2ZJR_052, IL_2ZJR_032IL_4IOA_032, IL_4IOA_053
Annotations
Basepair signature
cWW-tSH-R-tHW-cWW
Heat map statistics
Min 0.08 | Avg 0.37 | Max 0.70
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