Motif IL_93424.2 Version IL_93424.2 of this group appears in releases 0.7 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 9 | 1-9 | 2-7 | 2-8 | 3-6 | 4-5 | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4A1B_067 | 4A1B | 0.2673 | 2 | 1 | 26S RRNA | C | 1610 | A | 1611 | A | 1612 | G | 1615 | * | C | 1558 | U | 1559 | A | 1560 | A | 1561 | G | 1562 | cWW | tSH | tHW | cWW | ||
| 2 | IL_3U5H_069 | 3U5H | 0.2249 | 2 | 5 | 25S rRNA | C | 1585 | G | 1586 | A | 1587 | G | 1590 | * | C | 1532 | U | 1533 | A | 1534 | A | 1535 | G | 1536 | cWW | tSH | tHW | cWW | ||
| 3 | IL_1S72_052 | 1S72 | 0.2040 | 3 | UAA/GAN (H) | 0 | LSU rRNA | C | 1483 | G | 1484 | A | 1485 | G | 1489 | * | C | 1456 | U | 1457 | A | 1458 | A | 1459 | G | 1460 | cWW | tSH | tHW | cWW | |
| 4 | IL_2QBG_054 | 2QBG | 0.0000 | 1 | B | 23S rRNA | C | 1417 | G | 1418 | A | 1419 | G | 1421 | * | C | 1577 | U | 1578 | A | 1579 | A | 1580 | G | 1581 | cWW | tSH | tHW | cWW | ||
| 5 | IL_3V2F_052 | 3V2F | 0.1252 | 1 | A | 23S Ribosomal RNA | C | 1417 | G | 1418 | A | 1419 | G | 1421 | * | C | 1577 | U | 1578 | A | 1579 | A | 1580 | G | 1581 | cWW | tSH | tHW | cWW | ||
| 6 | IL_3V2F_049 | 3V2F | 0.1447 | 1 | A | 23S Ribosomal RNA | C | 1376 | G | 1377 | A | 1378 | G | 1380 | * | C | 1351 | U | 1352 | A | 1353 | A | 1354 | G | 1355 | cWW | tSH | tHW | cWW | ||
| 7 | IL_2QBG_051 | 2QBG | 0.1486 | 1 | B | 23S rRNA | C | 1376 | G | 1377 | A | 1378 | G | 1380 | * | C | 1351 | U | 1352 | A | 1353 | A | 1354 | G | 1355 | cWW | tSH | tHW | cWW | ||
| 8 | IL_1S72_038 | 1S72 | 0.1940 | 1 | UAA/GAN (H) | 0 | LSU rRNA | C | 1257 | G | 1258 | A | 1259 | A | 1261 | * | U | 1095 | U | 1096 | A | 1097 | A | 1098 | G | 1099 | cWW | tSH | tHW | cWW | |
| 9 | IL_3V2F_036 | 3V2F | 0.2174 | 1 | A | 23S Ribosomal RNA | C | 1153 | G | 1154 | A | 1155 | G | 1157 | * | C | 998 | U | 999 | A | 1000 | A | 1001 | G | 1002 | cWW | tSH | tHW | cWW | ||
| 10 | IL_2QBG_036 | 2QBG | 0.1963 | 1 | B | 23S rRNA | C | 1153 | G | 1154 | A | 1155 | G | 1157 | * | C | 998 | U | 999 | A | 1000 | A | 1001 | G | 1002 | cWW | tSH | tHW | cWW | ||
| 11 | IL_2ZJR_032 | 2ZJR | 0.2308 | 1 | UAA/GAN (H) | X | LSU rRNA | C | 1164 | G | 1165 | A | 1166 | G | 1168 | * | C | 1009 | U | 1010 | A | 1011 | A | 1012 | G | 1013 | cWW | tSH | tHW | cWW | |
| 12 | IL_2XXA_014 | 2XXA | 0.2912 | 3 | G | SSRP RNA | C | 31 | G | 32 | A | 33 | U | 37 | * | A | 62 | U | 63 | A | 64 | A | 65 | G | 66 | cWW | ntSH | ntHW | cWW | ||
| 13 | IL_3U5H_126 | 3U5H | 0.2438 | 1 | 5 | 25S rRNA | A | 3127 | G | 3128 | A | 3129 | U | 3131 | * | A | 3103 | U | 3104 | U | 3105 | A | 3106 | U | 3107 | cWW | tSH | tHW | cWW | ||
| 14 | IL_4A1B_122 | 4A1B | 0.2534 | 1 | 1 | 26S RRNA | A | 3116 | G | 3117 | A | 3118 | U | 3120 | * | A | 3092 | U | 3093 | U | 3094 | A | 3095 | U | 3096 | cWW | tSH | ntHW | cWW | ||
| 15 | IL_2ZJR_052 | 2ZJR | 0.3377 | 1 | UAA/GAN variation (H) | X | LSU rRNA | U | 1431 | G | 1432 | A | 1433 | G | 1435 | * | C | 1593 | U | 1594 | A | 1595 | A | 1596 | A | 1597 | cWW | tSH | tHW | cWW | |
| 16 | IL_2XZM_007 | 2XZM | 0.5407 | 1 | A | 18S RRNA | U | 63 | U | 64 | A | 66 | G | 67 | * | C | 78 | G | 79 | A | 80 | A | 81 | A | 82 | cWW | ntWH | ntHS | cWW | ||
| 17 | IL_3U5H_024 | 3U5H | 0.4374 | 0 | 5 | 25S rRNA | G | 725 | G | 726 | G | 727 | G | 728 | * | U | 741 | G | 742 | C | 743 | A | 744 | C | 745 | cWW | tSH | ntHS | cWW | ||
| 18 | IL_3U5H_124 | 3U5H | 0.4476 | 2 | 5 | 25S rRNA | U | 3054 | U | 3055 | U | 3057 | G | 3059 | * | C | 3084 | G | 3085 | A | 3086 | A | 3087 | G | 3088 | cWW | cWW | ||||
| 19 | IL_1S72_092 | 1S72 | 0.4017 | 1 | UAA/GAN (H) | 0 | LSU rRNA | U | 2724 | G | 2725 | A | 2727 | C | 2728 | * | G | 2754 | G | 2755 | U | 2756 | A | 2757 | G | 2758 | cWW | tSH | cWW | ||
| 20 | IL_3V2F_057 | 3V2F | 0.5213 | 0 | A | 23S Ribosomal RNA | U | 1518 | G | 1519 | G | 1520 | U | 1523 | * | A | 1469 | G | 1470 | A | 1471 | A | 1472 | G | 1473 | cWW | tSH | cWW | |||
| 21 | IL_4A1B_126 | 4A1B | 0.5056 | 0 | 1 | 26S RRNA | U | 3212 | G | 3213 | A | 3214 | C | 3215 | * | G | 3195 | G | 3196 | A | 3197 | A | 3198 | G | 3199 | cWW | ntSH | cWW | |||
| 22 | IL_1X8W_006 | 1X8W | 0.4804 | 1 | A | Tetrahymena ribozyme RNA | U | 253 | G | 254 | C | 255 | G | 257 | * | C | 216 | C | 217 | A | 218 | A | 219 | G | 220 | cWW | ntSH | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGAAG*CUAAG | 5 |
| CGAUG*CUAAG | 2 |
| AGAAU*AUUAU | 2 |
| CAAAAG*CUAAG | 1 |
| CGAAAG*CUAAG | 1 |
| CGAAAUG*CUAAG | 1 |
| CGAGA*UUAAG | 1 |
| CGAACCU*AUAAG | 1 |
| UGAUG*CUAAA | 1 |
| UUCAG*CGAAA | 1 |
| GGGG*UGCAC | 1 |
| UUUUUG*CGAAG | 1 |
| UGUAC*GGUAG | 1 |
| UGGU*AGAAG | 1 |
| UGAC*GGAAG | 1 |
| UGCAG*CCAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GAA*UAA | 5 |
| GAU*UAA | 3 |
| GAA*UUA | 2 |
| AAAA*UAA | 1 |
| GAAA*UAA | 1 |
| GAAAU*UAA | 1 |
| GAG*UAA | 1 |
| GAACC*UAA | 1 |
| UCA*GAA | 1 |
| GG*GCA | 1 |
| UUUU*GAA | 1 |
| GUA*GUA | 1 |
| GG*GAA | 1 |
| GA*GAA | 1 |
| GCA*CAA | 1 |
Release history
| Release | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 |
|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_93424.2 | Only in the parent motif |
|---|---|---|---|
| IL_93424.1 Compare | IL_2QBG_036, IL_2XZM_007, IL_2ZJR_052, IL_1S72_052, IL_2QBG_054, IL_1S72_038, IL_3U5H_069, IL_1X8W_006, IL_2ZJR_032, IL_2QBG_051, IL_1S72_092, IL_3U5H_024, IL_3U5H_124, IL_4A1B_122, IL_3U5H_126, IL_2XXA_014, IL_4A1B_126, IL_4A1B_067 | IL_3V2F_057, IL_3V2F_036, IL_3V2F_052, IL_3V2F_049 | IL_3UXR_036, IL_3UXR_057, IL_3UXR_049, IL_2XXA_007, IL_3UXR_052 |
Children motifs
| Child motif | Common motif instances | Only in IL_93424.2 | Only in the child motif |
|---|---|---|---|
| IL_93424.3 Compare | IL_2QBG_036, IL_2XZM_007, IL_1S72_052, IL_2QBG_054, IL_1S72_038, IL_3U5H_069, IL_1X8W_006, IL_2QBG_051, IL_1S72_092, IL_3V2F_057, IL_3V2F_036, IL_3U5H_024, IL_3V2F_052, IL_3U5H_124, IL_4A1B_122, IL_3U5H_126, IL_2XXA_014, IL_4A1B_126, IL_3V2F_049, IL_4A1B_067 | IL_2ZJR_052, IL_2ZJR_032 | IL_4IOA_032, IL_4IOA_053 |
- Annotations
-
- (17)
- UAA/GAN (H) (4)
- UAA/GAN variation (H) (1)
- Basepair signature
- cWW-tSH-R-tHW-cWW
- Heat map statistics
- Min 0.08 | Avg 0.37 | Max 0.70
Coloring options: