IL_93424.2

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)		1		2		3		4	break		5		6		7		8		9	1-9	2-7	2-8	3-6	4-5
1	IL_4A1B_067	4A1B	0.2673	2		1	C	1610	A	1611	A	1612	G	1615	*	C	1558	U	1559	A	1560	A	1561	G	1562	cWW		tSH	tHW	cWW
2	IL_3U5H_069	3U5H	0.2249	2		5	C	1585	G	1586	A	1587	G	1590	*	C	1532	U	1533	A	1534	A	1535	G	1536	cWW		tSH	tHW	cWW
3	IL_1S72_052	1S72	0.2040	3	UAA/GAN (H)	0	C	1483	G	1484	A	1485	G	1489	*	C	1456	U	1457	A	1458	A	1459	G	1460	cWW		tSH	tHW	cWW
4	IL_2QBG_054	2QBG	0.0000	1		B	C	1417	G	1418	A	1419	G	1421	*	C	1577	U	1578	A	1579	A	1580	G	1581	cWW		tSH	tHW	cWW
5	IL_3V2F_052	3V2F	0.1252	1		A	C	1417	G	1418	A	1419	G	1421	*	C	1577	U	1578	A	1579	A	1580	G	1581	cWW		tSH	tHW	cWW
6	IL_3V2F_049	3V2F	0.1447	1		A	C	1376	G	1377	A	1378	G	1380	*	C	1351	U	1352	A	1353	A	1354	G	1355	cWW		tSH	tHW	cWW
7	IL_2QBG_051	2QBG	0.1486	1		B	C	1376	G	1377	A	1378	G	1380	*	C	1351	U	1352	A	1353	A	1354	G	1355	cWW		tSH	tHW	cWW
8	IL_1S72_038	1S72	0.1940	1	UAA/GAN (H)	0	C	1257	G	1258	A	1259	A	1261	*	U	1095	U	1096	A	1097	A	1098	G	1099	cWW		tSH	tHW	cWW
9	IL_3V2F_036	3V2F	0.2174	1		A	C	1153	G	1154	A	1155	G	1157	*	C	998	U	999	A	1000	A	1001	G	1002	cWW		tSH	tHW	cWW
10	IL_2QBG_036	2QBG	0.1963	1		B	C	1153	G	1154	A	1155	G	1157	*	C	998	U	999	A	1000	A	1001	G	1002	cWW		tSH	tHW	cWW
11	IL_2ZJR_032	2ZJR	0.2308	1	UAA/GAN (H)	X	C	1164	G	1165	A	1166	G	1168	*	C	1009	U	1010	A	1011	A	1012	G	1013	cWW		tSH	tHW	cWW
12	IL_2XXA_014	2XXA	0.2912	3		G	C	31	G	32	A	33	U	37	*	A	62	U	63	A	64	A	65	G	66	cWW		ntSH	ntHW	cWW
13	IL_3U5H_126	3U5H	0.2438	1		5	A	3127	G	3128	A	3129	U	3131	*	A	3103	U	3104	U	3105	A	3106	U	3107	cWW		tSH	tHW	cWW
14	IL_4A1B_122	4A1B	0.2534	1		1	A	3116	G	3117	A	3118	U	3120	*	A	3092	U	3093	U	3094	A	3095	U	3096	cWW		tSH	ntHW	cWW
15	IL_2ZJR_052	2ZJR	0.3377	1	UAA/GAN variation (H)	X	U	1431	G	1432	A	1433	G	1435	*	C	1593	U	1594	A	1595	A	1596	A	1597	cWW		tSH	tHW	cWW
16	IL_2XZM_007	2XZM	0.5407	1		A	U	63	U	64	A	66	G	67	*	C	78	G	79	A	80	A	81	A	82	cWW	ntWH		ntHS	cWW
17	IL_3U5H_024	3U5H	0.4374	0		5	G	725	G	726	G	727	G	728	*	U	741	G	742	C	743	A	744	C	745	cWW		tSH	ntHS	cWW
18	IL_3U5H_124	3U5H	0.4476	2		5	U	3054	U	3055	U	3057	G	3059	*	C	3084	G	3085	A	3086	A	3087	G	3088	cWW				cWW
19	IL_1S72_092	1S72	0.4017	1	UAA/GAN (H)	0	U	2724	G	2725	A	2727	C	2728	*	G	2754	G	2755	U	2756	A	2757	G	2758	cWW		tSH		cWW
20	IL_3V2F_057	3V2F	0.5213	0		A	U	1518	G	1519	G	1520	U	1523	*	A	1469	G	1470	A	1471	A	1472	G	1473	cWW		tSH		cWW
21	IL_4A1B_126	4A1B	0.5056	0		1	U	3212	G	3213	A	3214	C	3215	*	G	3195	G	3196	A	3197	A	3198	G	3199	cWW		ntSH		cWW
22	IL_1X8W_006	1X8W	0.4804	1		A	U	253	G	254	C	255	G	257	*	C	216	C	217	A	218	A	219	G	220	cWW		ntSH		cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CGAAG*CUAAG	5
CGAUG*CUAAG	2
AGAAU*AUUAU	2
CAAAAG*CUAAG	1
CGAAAG*CUAAG	1
CGAAAUG*CUAAG	1
CGAGA*UUAAG	1
CGAACCU*AUAAG	1
UGAUG*CUAAA	1
UUCAG*CGAAA	1
GGGG*UGCAC	1
UUUUUG*CGAAG	1
UGUAC*GGUAG	1
UGGU*AGAAG	1
UGAC*GGAAG	1
UGCAG*CCAAG	1

Non-Watson-Crick part of the motif

Sequence	Counts
GAA*UAA	5
GAU*UAA	3
GAA*UUA	2
AAAA*UAA	1
GAAA*UAA	1
GAAAU*UAA	1
GAG*UAA	1
GAACC*UAA	1
UCA*GAA	1
GG*GCA	1
UUUU*GAA	1
GUA*GUA	1
GG*GAA	1
GA*GAA	1
GCA*CAA	1

Release history

Release	0.7	0.8	0.9	0.10	0.11	0.12	1.0
Date	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-03-04
Status	Updated, 1 parent	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in IL_93424.2	Only in the parent motif
IL_93424.1 Compare	IL_2QBG_036, IL_2XZM_007, IL_2ZJR_052, IL_1S72_052, IL_2QBG_054, IL_1S72_038, IL_3U5H_069, IL_1X8W_006, IL_2ZJR_032, IL_2QBG_051, IL_1S72_092, IL_3U5H_024, IL_3U5H_124, IL_4A1B_122, IL_3U5H_126, IL_2XXA_014, IL_4A1B_126, IL_4A1B_067	IL_3V2F_057, IL_3V2F_036, IL_3V2F_052, IL_3V2F_049	IL_3UXR_036, IL_3UXR_057, IL_3UXR_049, IL_2XXA_007, IL_3UXR_052

Children motifs

Child motif	Common motif instances	Only in IL_93424.2	Only in the child motif
IL_93424.3 Compare	IL_2QBG_036, IL_2XZM_007, IL_1S72_052, IL_2QBG_054, IL_1S72_038, IL_3U5H_069, IL_1X8W_006, IL_2QBG_051, IL_1S72_092, IL_3V2F_057, IL_3V2F_036, IL_3U5H_024, IL_3V2F_052, IL_3U5H_124, IL_4A1B_122, IL_3U5H_126, IL_2XXA_014, IL_4A1B_126, IL_3V2F_049, IL_4A1B_067	IL_2ZJR_052, IL_2ZJR_032	IL_4IOA_032, IL_4IOA_053

Motif IL_93424.2 Version IL_93424.2 of this group appears in releases 0.7 to 1.0 Download Csv Json

3D structures

Complete motif including flanking bases

Non-Watson-Crick part of the motif

Release history

Parent motifs

Children motifs

Motif IL_93424.2 Version IL_93424.2 of this group appears in releases 0.7 to 1.0

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Csv

Json