IL_2ZJR_049

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

GGU*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2ZJR_049 not in the Motif Atlas

Geometric match to IL_4KR9_001

Geometric discrepancy: 0.1637

The information below is about IL_4KR9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

2ZJR|1|X|G|1368
2ZJR|1|X|G|1369
2ZJR|1|X|U|1370
*
2ZJR|1|X|G|1387
2ZJR|1|X|C|1388
2ZJR|1|X|C|1389

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain 2

50S ribosomal protein L34

Chain A

50S ribosomal protein L2