3D structure

PDB id
2ZJR (explore in PDB, NAKB, or RNA 3D Hub)
Description
Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans
Experimental method
X-RAY DIFFRACTION
Resolution
2.91 Å

Loop

Sequence
GAGAAC*GAC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_45262.2
Basepair signature
cWW-L-L-L-tHS-cWW
Number of instances in this motif group
5

Unit IDs

2ZJR|1|X|G|1668
2ZJR|1|X|A|1669
2ZJR|1|X|G|1670
2ZJR|1|X|A|1671
2ZJR|1|X|A|1672
2ZJR|1|X|C|1673
*
2ZJR|1|X|G|1987
2ZJR|1|X|A|1988
2ZJR|1|X|C|1989

Current chains

Chain X
ribosomal 23S RNA

Nearby chains

Chain B
50S ribosomal protein L3
Chain K
50S ribosomal protein L17

Coloring options:

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