IL_2ZJR_060

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

GAGAAC*GAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_45262.2

Basepair signature

cWW-L-L-L-tHS-cWW

Number of instances in this motif group

5

Unit IDs

2ZJR|1|X|G|1668
2ZJR|1|X|A|1669
2ZJR|1|X|G|1670
2ZJR|1|X|A|1671
2ZJR|1|X|A|1672
2ZJR|1|X|C|1673
*
2ZJR|1|X|G|1987
2ZJR|1|X|A|1988
2ZJR|1|X|C|1989

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain K

50S ribosomal protein L17