IL_2ZJR_066

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

UGCCAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

2ZJR|1|X|C|1792, 2ZJR|1|X|C|1808, 2ZJR|1|X|U|1812

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_98591.2

Basepair signature

cWW-cSS-tSS-tHH-tWW-tHH-tHS-cWW

Number of instances in this motif group

4

Unit IDs

2ZJR|1|X|U|1789
2ZJR|1|X|G|1790
2ZJR|1|X|C|1791
2ZJR|1|X|C|1792
2ZJR|1|X|A|1793
2ZJR|1|X|A|1794
2ZJR|1|X|C|1795
*
2ZJR|1|X|G|1805
2ZJR|1|X|G|1806
2ZJR|1|X|A|1807
2ZJR|1|X|C|1808
2ZJR|1|X|G|1809
2ZJR|1|X|U|1810
2ZJR|1|X|A|1811
2ZJR|1|X|U|1812
2ZJR|1|X|A|1813

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain A

50S ribosomal protein L2