IL_2ZJR_081

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

CAA*UGUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_53774.1

Basepair signature

cWW-R-R-tHS-cWW

Number of instances in this motif group

3

Unit IDs

2ZJR|1|X|C|2276
2ZJR|1|X|A|2277
2ZJR|1|X|A|2278
*
2ZJR|1|X|U|2296
2ZJR|1|X|G|2297
2ZJR|1|X|U|2298
2ZJR|1|X|A|2299
2ZJR|1|X|G|2300

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain D

50S ribosomal protein L5

Chain L

50S ribosomal protein L18

Chain Y

5S ribosomal RNA; 5S rRNA