Motif IL_53774.1 Version IL_53774.1 of this group appears in releases 0.7 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | break | 4 | 5 | 6 | 7 | 8 | 1-8 | 2-5 | 3-4 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_3U5H_104 | 3U5H | 0.3487 | 0 | 5 | 25S rRNA | C | 2666 | A | 2667 | U | 2668 | * | A | 2686 | G | 2687 | U | 2688 | A | 2689 | G | 2690 | cWW | tHS | cWW | |
| 2 | IL_2ZJR_081 | 2ZJR | 0.0000 | 0 | X | LSU rRNA | C | 2276 | A | 2277 | A | 2278 | * | U | 2296 | G | 2297 | U | 2298 | A | 2299 | G | 2300 | cWW | ntHS | cWW | |
| 3 | IL_3V2F_085 | 3V2F | 0.4286 | 0 | A | 23S Ribosomal RNA | C | 2297 | A | 2298 | G | 2299 | * | C | 2317 | G | 2318 | G | 2319 | A | 2320 | G | 2321 | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAU*AGUAG | 1 |
| CAA*UGUAG | 1 |
| CAG*CGGAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| A*GUA | 2 |
| A*GGA | 1 |
Release history
| Release | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 |
|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_53774.1 | Only in the parent motif |
|---|---|---|---|
| IL_48187.1 Compare | IL_2ZJR_081, IL_3U5H_104 | IL_3V2F_085 | IL_3UXR_012, IL_2QBG_082, IL_1S72_078, IL_2ZJR_078, IL_3U5H_100, IL_1S72_076, IL_3UXR_079, IL_3UXR_086, IL_4A1B_102 |
Children motifs
| Child motif | Common motif instances | Only in IL_53774.1 | Only in the child motif |
|---|---|---|---|
| IL_28468.1 Compare | IL_3V2F_085 | IL_2ZJR_081, IL_3U5H_104 | |
| IL_16207.1 Compare | IL_3U5H_104 | IL_2ZJR_081, IL_3V2F_085 | IL_2QBG_087, IL_4A1B_102, IL_1S72_078, IL_4IOA_082 |
- Annotations
- Basepair signature
- cWW-R-R-tHS-cWW
- Heat map statistics
- Min 0.35 | Avg 0.29 | Max 0.55
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