IL_2ZJR_094

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

UUGAG*CAAGAUGAG

Length

14 nucleotides

Bulged bases

2ZJR|1|X|G|2760

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38960.1

Basepair signature

cWW-tSH-tWH-tSH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

2ZJR|1|X|U|2615
2ZJR|1|X|U|2616
2ZJR|1|X|G|2617
2ZJR|1|X|A|2618
2ZJR|1|X|G|2619
*
2ZJR|1|X|C|2754
2ZJR|1|X|A|2755
2ZJR|1|X|A|2756
2ZJR|1|X|G|2757
2ZJR|1|X|A|2758
2ZJR|1|X|U|2759
2ZJR|1|X|G|2760
2ZJR|1|X|A|2761
2ZJR|1|X|G|2762

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain G

50S ribosomal protein L13