Motif IL_38960.1 Version IL_38960.1 of this group appears in releases 1.0 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | break | 6 | 7 | 8 | 9 | 10 | 1-10 | 2-8 | 2-9 | 3-9 | 4-7 | 5-6 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_2ZJR_094 | 2ZJR | 0.1116 | 4 | tSH-tHS-tHW (H) | X | LSU rRNA | U | 2615 | U | 2616 | G | 2617 | A | 2618 | G | 2619 | * | C | 2754 | A | 2755 | A | 2756 | A | 2758 | G | 2762 | cWW | tWH | tSH | ntHS | cWW | |
| 2 | IL_3V2F_098 | 3V2F | 0.0000 | 4 | A | LSU rRNA | U | 2636 | U | 2637 | G | 2638 | A | 2639 | G | 2640 | * | C | 2774 | A | 2775 | A | 2776 | A | 2778 | G | 2782 | cWW | tWH | tSH | tHS | cWW | ||
| 3 | IL_1S72_089 | 1S72 | 0.2323 | 4 | 0 | LSU rRNA | C | 2672 | U | 2673 | G | 2674 | A | 2675 | C | 2676 | * | G | 2809 | G | 2810 | A | 2811 | A | 2813 | G | 2817 | cWW | tWH | tSH | tHS | cWW | ||
| 4 | IL_2ZJR_048 | 2ZJR | 0.6987 | 0 | X | LSU rRNA | C | 1364 | U | 1365 | A | 1366 | A | 1367 | G | 1368 | * | C | 1389 | G | 1390 | A | 1391 | U | 1392 | G | 1393 | cWW | tWH | tHS | cWW | |||
| 5 | IL_3V2F_071 | 3V2F | 0.8277 | 0 | A | LSU rRNA | U | 1851 | C | 1852 | A | 1853 | A | 1854 | G | 1855 | * | C | 1887 | G | 1888 | A | 1889 | A | 1890 | G | 1891 | cWW | tSH | tHS | cWW | |||
| 6 | IL_2ZJR_070 | 2ZJR | 0.9435 | 0 | UAA/GAN with extra stack (H) | X | LSU rRNA | U | 1843 | C | 1844 | A | 1845 | A | 1846 | G | 1847 | * | U | 1870 | G | 1871 | A | 1872 | A | 1873 | G | 1874 | cWW | ntSH | ncWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUGAG*CAAGAUGAG | 2 |
| CUGAC*GGAAAAGAG | 1 |
| CUAAG*CGAUG | 1 |
| UCAAG*CGAAG | 1 |
| UCAAG*UGAAG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UGA*AAGAUGA | 2 |
| CAA*GAA | 2 |
| UGA*GAAAAGA | 1 |
| UAA*GAU | 1 |
Release history
| Release | 1.0 |
|---|---|
| Date | 2013-03-04 |
| Status | New id, 2 parents |
Parent motifs
| Parent motif | Common motif instances | Only in IL_38960.1 | Only in the parent motif |
|---|---|---|---|
| IL_24022.2 Compare | IL_3V2F_098, IL_1S72_089, IL_2ZJR_094 | IL_2ZJR_070, IL_2ZJR_048, IL_3V2F_071 | IL_3V2F_027, IL_2QBG_031, IL_1S72_034 |
| IL_62661.2 Compare | IL_2ZJR_070, IL_2ZJR_048, IL_3V2F_071 | IL_3V2F_098, IL_1S72_089, IL_2ZJR_094 | IL_4A1B_008 |
Children motifs
| Child motif | Common motif instances | Only in IL_38960.1 | Only in the child motif |
|---|---|---|---|
| IL_39585.1 Compare | IL_3V2F_098, IL_1S72_089, IL_3V2F_071 | IL_2ZJR_070, IL_2ZJR_048, IL_2ZJR_094 | IL_4IOA_069, IL_4IOA_050, IL_4IOA_095 |
- Annotations
-
- (4)
- UAA/GAN with extra stack (H) (1)
- tSH-tHS-tHW (H) (1)
- Basepair signature
- cWW-tSH-tWH-tSH-tHS-cWW
- Heat map statistics
- Min 0.11 | Avg 0.55 | Max 0.97
Coloring options: