IL_2ZJR_095

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

CUAGUAC*GGACCG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49493.2

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

14

Unit IDs

2ZJR|1|X|C|2631
2ZJR|1|X|U|2632
2ZJR|1|X|A|2633
2ZJR|1|X|G|2634
2ZJR|1|X|U|2635
2ZJR|1|X|A|2636
2ZJR|1|X|C|2637
*
2ZJR|1|X|G|2642
2ZJR|1|X|G|2643
2ZJR|1|X|A|2644
2ZJR|1|X|C|2645
2ZJR|1|X|C|2646
2ZJR|1|X|G|2647

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain E

50S ribosomal protein L6

Chain H

50S ribosomal protein L14