IL_2ZJR_099

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

GAUAAC*GGAAGC

Length

12 nucleotides

Bulged bases

2ZJR|1|X|A|2745

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_97057.2

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

2ZJR|1|X|G|2717
2ZJR|1|X|A|2718
2ZJR|1|X|U|2719
2ZJR|1|X|A|2720
2ZJR|1|X|A|2721
2ZJR|1|X|C|2722
*
2ZJR|1|X|G|2742
2ZJR|1|X|G|2743
2ZJR|1|X|A|2744
2ZJR|1|X|A|2745
2ZJR|1|X|G|2746
2ZJR|1|X|C|2747

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain 4

50S ribosomal protein L36

Chain E

50S ribosomal protein L6

Chain G

50S ribosomal protein L13