Motif IL_97057.2 Version IL_97057.2 of this group appears in releases 0.7 to 1.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | 5-8 | 6-7 | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_1S72_019 | 1S72 | 0.4613 | 0 | 0 | LSU rRNA | A | 562 | C | 563 | G | 564 | A | 565 | A | 566 | U | 567 | * | A | 591 | G | 592 | A | 593 | C | 594 | U | 595 | cWW | cWB | tHS | cWW | ||
| 2 | IL_1S72_094 | 1S72 | 0.1895 | 1 | 0 | LSU rRNA | G | 2772 | G | 2773 | U | 2774 | A | 2775 | A | 2776 | G | 2777 | * | C | 2797 | G | 2798 | A | 2799 | A | 2801 | C | 2802 | cWW | cWW | tWH | tHS | cWW | |
| 3 | IL_3V2F_103 | 3V2F | 0.0846 | 1 | A | 23S Ribosomal RNA | G | 2737 | A | 2738 | U | 2739 | A | 2740 | A | 2741 | C | 2742 | * | G | 2762 | G | 2763 | A | 2764 | G | 2766 | C | 2767 | cWW | cWW | tWH | tHS | cWW | |
| 4 | IL_2ZJR_099 | 2ZJR | 0.0000 | 1 | X | LSU rRNA | G | 2717 | A | 2718 | U | 2719 | A | 2720 | A | 2721 | C | 2722 | * | G | 2742 | G | 2743 | A | 2744 | G | 2746 | C | 2747 | cWW | cWW | tWH | tHS | cWW | |
| 5 | IL_4A1B_054 | 4A1B | 0.1627 | 1 | 1 | 26S RRNA | G | 1193 | A | 1194 | U | 1195 | A | 1196 | A | 1197 | G | 1198 | * | C | 1355 | G | 1356 | A | 1357 | A | 1359 | C | 1360 | cWW | cwW | tWH | tHS | cWW | |
| 6 | IL_2QBG_105 | 2QBG | 0.1737 | 1 | B | 23S rRNA | G | 2737 | A | 2738 | U | 2739 | A | 2740 | A | 2741 | G | 2742 | * | C | 2762 | G | 2763 | A | 2764 | A | 2766 | C | 2767 | cWW | cwW | tWH | tHS | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| GAUAAC*GGAAGC | 2 |
| ACGAAU*AGACU | 1 |
| GGUAAG*CGAAAC | 1 |
| GAUAAG*CGAUAC | 1 |
| GAUAAG*CGAAAC | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AUAA*GAAG | 2 |
| CGAA*GAC | 1 |
| GUAA*GAAA | 1 |
| AUAA*GAUA | 1 |
| AUAA*GAAA | 1 |
Release history
| Release | 0.7 | 0.8 | 0.9 | 0.10 | 0.11 | 0.12 | 1.0 |
|---|---|---|---|---|---|---|---|
| Date | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-02-17 | 2013-03-04 |
| Status | Updated, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
| Parent motif | Common motif instances | Only in IL_97057.2 | Only in the parent motif |
|---|---|---|---|
| IL_97057.1 Compare | IL_1S72_019, IL_2QBG_105, IL_1S72_094, IL_2ZJR_099, IL_4A1B_054 | IL_3V2F_103 | IL_3UXR_103 |
Children motifs
| Child motif | Common motif instances | Only in IL_97057.2 | Only in the child motif |
|---|---|---|---|
| IL_97057.3 Compare | IL_1S72_019, IL_2QBG_105, IL_4A1B_054, IL_1S72_094, IL_3V2F_103 | IL_2ZJR_099 | IL_4IOA_100 |
- Annotations
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Heat map statistics
- Min 0.08 | Avg 0.24 | Max 0.52
Coloring options: