IL_2ZJR_109

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

UGUUG*UUAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2ZJR_109 not in the Motif Atlas

Homologous match to IL_4WF9_029

Geometric discrepancy: 0.3876

The information below is about IL_4WF9_029

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06300.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

2ZJR|1|X|U|857
2ZJR|1|X|G|858
2ZJR|1|X|U|859
2ZJR|1|X|U|860
2ZJR|1|X|G|861
*
2ZJR|1|X|U|942
2ZJR|1|X|U|943
2ZJR|1|X|A|944
2ZJR|1|X|G|945

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain W

50S ribosomal protein L30