Motif IL_01742.1 Version IL_01742.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | break | 5 | 6 | 7 | 8 | 1-8 | 2-6 | 3-7 | 4-5 | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | IL_4WF9_029 | 4WF9 | 0.8171 | 1 | X | LSU rRNA | U | 975 | U | 976 | A | 977 | A | 978 | * | U | 889 | A | 891 | U | 892 | G | 893 | cWW | ncWH | cWW | |
| 2 | IL_9E6Q_013 | 9E6Q | 0.0000 | 2 | 1 | LSU rRNA | G | 302 | C | 303 | A | 305 | C | 306 | * | G | 388 | G | 390 | U | 391 | C | 392 | cWW | cWW | cWW | cWW |
| 3 | IL_8B0X_179 | 8B0X | 0.4543 | 2 | a | LSU rRNA | A | 846 | A | 847 | U | 849 | C | 850 | * | G | 932 | U | 934 | A | 935 | U | 936 | cWW | ntWW | cWW | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UUAA*UGAUG | 1 |
| GCAAC*GAGUC | 1 |
| AAUUC*GUUAU | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| UA*GAU | 1 |
| CAA*AGU | 1 |
| AUU*UUA | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (3)
- Basepair signature
- cWW-L-cWW-R-cWW
- Heat map statistics
- Min 0.45 | Avg 0.49 | Max 0.94
Coloring options: