IL_2ZJR_113

3D structure

PDB id

2ZJR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Refined native structure of the large ribosomal subunit (50S) from Deinococcus radiodurans

Experimental method

X-RAY DIFFRACTION

Resolution

2.91 Å

Loop

Sequence

GGAACUUUG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2ZJR_113 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.0902

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_22854.4

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

7

Unit IDs

2ZJR|1|X|G|1683
2ZJR|1|X|G|1684
2ZJR|1|X|A|1685
2ZJR|1|X|A|1686
2ZJR|1|X|C|1687
2ZJR|1|X|U|1688
2ZJR|1|X|U|1689
2ZJR|1|X|U|1690
2ZJR|1|X|G|1691
*
2ZJR|1|X|C|1973
2ZJR|1|X|U|1974
2ZJR|1|X|G|1975
2ZJR|1|X|U|1976
2ZJR|1|X|C|1977

Current chains

Chain X

ribosomal 23S RNA

Nearby chains

Chain B

50S ribosomal protein L3

Chain H

50S ribosomal protein L14