IL_2ZM6_029

3D structure

PDB id

2ZM6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the Thermus thermophilus 30S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAGAG*UGGU

Length

9 nucleotides

Bulged bases

2ZM6|1|A|A|665

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_2ZM6_029 not in the Motif Atlas

Homologous match to IL_4LFB_029

Geometric discrepancy: 0.1148

The information below is about IL_4LFB_029

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

2ZM6|1|A|G|662
2ZM6|1|A|A|663
2ZM6|1|A|G|664
2ZM6|1|A|A|665
2ZM6|1|A|G|666
*
2ZM6|1|A|U|740
2ZM6|1|A|G|741
2ZM6|1|A|G|742
2ZM6|1|A|U|743

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain F

30S ribosomal protein S6

Chain O

30S ribosomal protein S15

Chain R

30S ribosomal protein S18