3D structure

PDB id
2ZM6 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of the Thermus thermophilus 30S ribosomal subunit
Experimental method
X-RAY DIFFRACTION
Resolution
3.3 Å

Loop

Sequence
GAGUAG*CGCAGAUAC
Length
15 nucleotides
Bulged bases
2ZM6|1|A|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_2ZM6_031 not in the Motif Atlas
Homologous match to IL_4LFB_031
Geometric discrepancy: 0.1084
The information below is about IL_4LFB_031
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_95727.1
Basepair signature
cWW-L-tSH-L-tHW-tHS-R-cWW-L
Number of instances in this motif group
1

Unit IDs

2ZM6|1|A|G|683
2ZM6|1|A|A|684
2ZM6|1|A|G|685
2ZM6|1|A|U|686
2ZM6|1|A|A|687
2ZM6|1|A|G|688
*
2ZM6|1|A|C|699
2ZM6|1|A|G|700
2ZM6|1|A|C|701
2ZM6|1|A|A|702
2ZM6|1|A|G|703
2ZM6|1|A|A|704
2ZM6|1|A|U|705
2ZM6|1|A|A|706
2ZM6|1|A|C|707

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain K
30S ribosomal protein S11

Coloring options:


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