IL_30QZ_043

3D structure

PDB id

30QZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome with peptidyl-tRNA and Hsp15

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

30QZ|1|a|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_30QZ_043 not in the Motif Atlas

Homologous match to IL_7A0S_043

Geometric discrepancy: 0.1774

The information below is about IL_7A0S_043

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90775.3

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

30

Unit IDs

30QZ|1|a|C|1208
30QZ|1|a|U|1209
30QZ|1|a|G|1210
30QZ|1|a|C|1211
30QZ|1|a|G|1212
30QZ|1|a|A|1213
30QZ|1|a|A|1214
30QZ|1|a|G|1215
*
30QZ|1|a|U|1234
30QZ|1|a|G|1235
30QZ|1|a|G|1236
30QZ|1|a|A|1237
30QZ|1|a|G|1238

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

Large ribosomal subunit protein bL20