IL_30QZ_068

3D structure

PDB id

30QZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 50S ribosome with peptidyl-tRNA and Hsp15

Experimental method

ELECTRON MICROSCOPY

Resolution

2.23 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

30QZ|1|a|A|1801, 30QZ|1|a|C|1816, 30QZ|1|a|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_30QZ_068 not in the Motif Atlas

Homologous match to IL_7A0S_065

Geometric discrepancy: 0.0982

The information below is about IL_7A0S_065

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.6

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

30QZ|1|a|U|1798
30QZ|1|a|G|1799
30QZ|1|a|C|1800
30QZ|1|a|A|1801
30QZ|1|a|A|1802
30QZ|1|a|A|1803
30QZ|1|a|C|1804
*
30QZ|1|a|G|1813
30QZ|1|a|G|1814
30QZ|1|a|A|1815
30QZ|1|a|C|1816
30QZ|1|a|G|1817
30QZ|1|a|U|1818
30QZ|1|a|A|1819
30QZ|1|a|U|1820
30QZ|1|a|A|1821

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2