IL_30RA_013

3D structure

PDB id

30RA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with peptidyl-tRNA, mRNA and Hsp15

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

GAUUAG*CGACGAUC

Length

14 nucleotides

Bulged bases

30RA|1|A|U|244, 30RA|1|A|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_30RA_013 not in the Motif Atlas

Homologous match to IL_6CZR_123

Geometric discrepancy: 0.1573

The information below is about IL_6CZR_123

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.2

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

30RA|1|A|G|242
30RA|1|A|A|243
30RA|1|A|U|244
30RA|1|A|U|245
30RA|1|A|A|246
30RA|1|A|G|247
*
30RA|1|A|C|277
30RA|1|A|G|278
30RA|1|A|A|279
30RA|1|A|C|280
30RA|1|A|G|281
30RA|1|A|A|282
30RA|1|A|U|283
30RA|1|A|C|284

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain Q

Small ribosomal subunit protein uS17