IL_30RA_059

3D structure

PDB id

30RA (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with peptidyl-tRNA, mRNA and Hsp15

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78 Å

Loop

Sequence

(5MC)AC*GAAG

Length

7 nucleotides

Bulged bases

30RA|1|A|A|1492, 30RA|1|A|A|1493

QA status

Modified nucleotides: 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_30RA_059 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.2093

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_53541.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

30RA|1|A|5MC|1407
30RA|1|A|A|1408
30RA|1|A|C|1409
*
30RA|1|A|G|1491
30RA|1|A|A|1492
30RA|1|A|A|1493
30RA|1|A|G|1494

Current chains

Chain A

16S rRNA

Nearby chains

Chain L

Small ribosomal subunit protein uS12

Chain a

Large subunit ribosomal RNA; LSU rRNA