IL_364D_004

3D structure

PDB id

364D (explore in PDB, NAKB, or RNA 3D Hub)

Description

3.0 A STRUCTURE OF FRAGMENT I FROM E. COLI 5S RRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUG*UGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

Self complementary

Broad Annotation

Self complementary

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

364D|1|B|G|79
364D|1|B|U|80
364D|1|B|G|81
*
364D|1|C|U|95
364D|1|C|G|96
364D|1|C|C|97

Current chains

Chain B

RNA (5'-R(*CP*CP*GP*AP*UP*GP*GP*UP*AP*GP*UP*GP*UP*GP*GP*GP*G *UP*C)-3')

Chain C

RNA (5'-R(*CP*CP*CP*CP*AP*UP*GP*CP*GP*AP*GP*AP*GP*UP*AP*GP*G P*GP*AP*AP*CP*UP*GP*CP*CP*AP*GP*GP*CP*AP*U)-3')

Nearby chains