IL_37CP_003

3D structure

PDB id

37CP (explore in PDB, NAKB, or RNA 3D Hub)

Description

env2 cobalamin riboswitch aptamer domain in complex with ethynyl-N-CH2-cyclopropylpropiolamide-cobalamin

Experimental method

X-RAY DIFFRACTION

Resolution

2.78 Å

Loop

Sequence

AAAAGCAUAG*CCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_37CP_003 not in the Motif Atlas

Geometric match to IL_9E5O_003

Geometric discrepancy: 0.0541

The information below is about IL_9E5O_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_01094.1

Basepair signature

cWW-L-R-L-cWW-tWW-L-R-L-L

Number of instances in this motif group

2

Unit IDs

37CP|1|B|A|4
37CP|1|B|A|5
37CP|1|B|A|6
37CP|1|B|A|7
37CP|1|B|G|8
37CP|1|B|C|9
37CP|1|B|A|10
37CP|1|B|U|11
37CP|1|B|A|12
37CP|1|B|G|13
*
37CP|1|B|C|70
37CP|1|B|C|71
37CP|1|B|U|72

Current chains

Chain B

RNA (76-MER)

Nearby chains