IL_38JC_003

3D structure

PDB id

38JC (explore in PDB, NAKB, or RNA 3D Hub)

Description

RNA polymerase ribozyme 85h34 replication complex, consensus structure.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

CGAAC*GACCUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_38JC_003 not in the Motif Atlas

Geometric match to IL_6FZ0_002

Geometric discrepancy: 0.344

The information below is about IL_6FZ0_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_12409.1

Basepair signature

cWW-L-R-L-R-L-R-L-cWW

Number of instances in this motif group

1

Unit IDs

38JC|1|A|C|111
38JC|1|A|G|112
38JC|1|A|A|113
38JC|1|A|A|114
38JC|1|A|C|115
*
38JC|1|A|G|123
38JC|1|A|A|124
38JC|1|A|C|125
38JC|1|A|C|126
38JC|1|A|U|127
38JC|1|A|G|128

Current chains

Chain A

RNA polymerase ribozyme 85h34

Nearby chains