IL_3ADI_001

3D structure

PDB id

3ADI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Arabidopsis HYL1 and its molecular implications for miRNA processing

Experimental method

X-RAY DIFFRACTION

Resolution

3.2 Å

Loop

Sequence

ACC*GGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: ACC,GGU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3ADI_001 not in the Motif Atlas

Geometric match to IL_2ZNI_001

Geometric discrepancy: 0.2257

The information below is about IL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

3ADI|1|D|A|8
3ADI|1|D|C|9
3ADI|1|D|C|10
*
3ADI|1|E|G|1
3ADI|1|E|G|2
3ADI|1|E|U|3

Current chains

Chain D

RNA (5'-R(P*CP*UP*CP*GP*AP*UP*AP*AP*CP*C)-3')

Chain E

RNA (5'-R(*GP*GP*UP*UP*AP*UP*CP*GP*AP*G)-3')

Nearby chains