IL_3B0V_002

3D structure

PDB id

3B0V (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA-dihydrouridine synthase from Thermus thermophilus in complex with tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.51 Å

Loop

Sequence

GCUC*GAGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCUC,GAGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3B0V_002 not in the Motif Atlas

Homologous match to IL_2AKE_001

Geometric discrepancy: 0.5291

The information below is about IL_2AKE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3B0V|1|A|G|10
3B0V|1|A|C|11
3B0V|1|A|U|12
3B0V|1|A|C|13
*
3B0V|1|A|G|22
3B0V|1|A|A|23
3B0V|1|A|G|24
3B0V|1|A|C|25

Current chains

Chain A

tRNA

Nearby chains

Chain C

tRNA-dihydrouridine synthase