3B0V Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_3B0V_001 | 1/A/13:22 | tRNA D-loop | homologous HL_7LYF_001 NA | |
| HL_3B0V_004 | 1/B/13:22 | tRNA D-loop | geometric HL_7LYF_001 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_3B0V_007 | No text annotation | ||
| HL_3B0V_002 | No text annotation | ||
| HL_3B0V_003 | No text annotation | ||
| HL_3B0V_010 | T-loop with 2 stacked bulged bases | ||
| HL_3B0V_008 | No text annotation | ||
| HL_3B0V_009 | No text annotation | ||
| HL_3B0V_005 | No text annotation | ||
| HL_3B0V_006 | No text annotation | ||
| HL_3B0V_011 | T-loop with 2 stacked bulged bases |
Valid loops
No loops found
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_3B0V_001 | No text annotation | ||
| IL_3B0V_002 | No text annotation | ||
| IL_3B0V_003 | No text annotation | ||
| IL_3B0V_004 | Isolated non-canonical cWW pair |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_3B0V_003 | 1/A/6:28, 1/A/42:49, 1/A/65:67 | No text annotation | ||
| J3_3B0V_002 | 1/B/6:28, 1/B/42:51, 1/B/63:67 | No text annotation | ||
| J4_3B0V_002 | 1/B/6:10, 1/B/25:28, 1/B/42:49, 1/B/65:67 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_3B0V_001 | No text annotation | ||
| J4_3B0V_001 | No text annotation |
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