IL_3B0V_004

3D structure

PDB id

3B0V (explore in PDB, NAKB, or RNA 3D Hub)

Description

tRNA-dihydrouridine synthase from Thermus thermophilus in complex with tRNA

Experimental method

X-RAY DIFFRACTION

Resolution

3.51 Å

Loop

Sequence

GCU*AGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GCU,AGC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3B0V_004 not in the Motif Atlas

Geometric match to IL_1ZH5_001

Geometric discrepancy: 0.2241

The information below is about IL_1ZH5_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

3B0V|1|B|G|10
3B0V|1|B|C|11
3B0V|1|B|U|12
*
3B0V|1|B|A|23
3B0V|1|B|G|24
3B0V|1|B|C|25

Current chains

Chain B

tRNA

Nearby chains

Chain D

tRNA-dihydrouridine synthase