3D structure

PDB id
3BBX (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex
Experimental method
ELECTRON MICROSCOPY
Resolution
10 Å

Loop

Sequence
GGAACUG*CUAAGUAC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3BBX_011 not in the Motif Atlas
Geometric match to IL_5J7L_250
Geometric discrepancy: 0.0754
The information below is about IL_5J7L_250
Detailed Annotation
8x7 Sarcin-Ricin; G-bulge
Broad Annotation
Sarcin-Ricin; G-bulge
Motif group
IL_04346.10
Basepair signature
cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
Number of instances in this motif group
15

Unit IDs

3BBX|1|B|G|188
3BBX|1|B|G|189
3BBX|1|B|A|190
3BBX|1|B|A|191
3BBX|1|B|C|192
3BBX|1|B|U|193
3BBX|1|B|G|194
*
3BBX|1|B|C|201
3BBX|1|B|U|202
3BBX|1|B|A|203
3BBX|1|B|A|204
3BBX|1|B|G|205
3BBX|1|B|U|206
3BBX|1|B|A|207
3BBX|1|B|C|208

Current chains

Chain B
23S ribosomal RNA

Nearby chains

Chain 2
50S ribosomal protein L34
Chain E
50S ribosomal protein L4
Chain L
50S ribosomal protein L15
Chain Z
50S ribosomal protein L31

Coloring options:


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