3D structure

PDB id
3BBX (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex
Experimental method
ELECTRON MICROSCOPY
Resolution
10 Å

Loop

Sequence
GAAC*GAGUGAAAAAGAAC
Length
18 nucleotides
Bulged bases
3BBX|1|B|A|504, 3BBX|1|B|A|508
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3BBX_016 not in the Motif Atlas
Homologous match to IL_5J7L_255
Geometric discrepancy: 0.094
The information below is about IL_5J7L_255
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_81516.2
Basepair signature
cWW-cWS-tSH-L-tWH-cWW-tSS-tSH-L-R-L
Number of instances in this motif group
6

Unit IDs

3BBX|1|B|G|481
3BBX|1|B|A|482
3BBX|1|B|A|483
3BBX|1|B|C|484
*
3BBX|1|B|G|496
3BBX|1|B|A|497
3BBX|1|B|G|498
3BBX|1|B|U|499
3BBX|1|B|G|500
3BBX|1|B|A|501
3BBX|1|B|A|502
3BBX|1|B|A|503
3BBX|1|B|A|504
3BBX|1|B|A|505
3BBX|1|B|G|506
3BBX|1|B|A|507
3BBX|1|B|A|508
3BBX|1|B|C|509

Current chains

Chain B
23S ribosomal RNA

Nearby chains

Chain S
50S ribosomal protein L22
Chain U
50S ribosomal protein L24

Coloring options:


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