IL_3BBX_045

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

GUAAG*UAUC

Length

9 nucleotides

Bulged bases

3BBX|1|B|A|1205

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3BBX_045 not in the Motif Atlas

Homologous match to IL_5J7L_287

Geometric discrepancy: 0.2658

The information below is about IL_5J7L_287

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_91920.1

Basepair signature

cWW-cWW-tHH-cWW

Number of instances in this motif group

1

Unit IDs

3BBX|1|B|G|1202
3BBX|1|B|U|1203
3BBX|1|B|A|1204
3BBX|1|B|A|1205
3BBX|1|B|G|1206
*
3BBX|1|B|U|1240
3BBX|1|B|A|1241
3BBX|1|B|U|1242
3BBX|1|B|C|1243

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain E

50S ribosomal protein L4

Chain L

50S ribosomal protein L15