IL_3BBX_063

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

3BBX|1|B|G|1699

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3BBX_063 not in the Motif Atlas

Geometric match to IL_5J7L_308

Geometric discrepancy: 0.0747

The information below is about IL_5J7L_308

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

3BBX|1|B|C|1686
3BBX|1|B|G|1687
3BBX|1|B|U|1688
3BBX|1|B|A|1689
3BBX|1|B|A|1690
3BBX|1|B|C|1691
*
3BBX|1|B|G|1696
3BBX|1|B|G|1697
3BBX|1|B|A|1698
3BBX|1|B|G|1699
3BBX|1|B|A|1700
3BBX|1|B|A|1701
3BBX|1|B|G|1702

Current chains

Chain B

23S ribosomal RNA

Nearby chains