IL_3BBX_064

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

UAUGUAG*UGAAA

Length

12 nucleotides

Bulged bases

3BBX|1|B|U|1714

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3BBX_064 not in the Motif Atlas

Homologous match to IL_5J7L_309

Geometric discrepancy: 0.1597

The information below is about IL_5J7L_309

Detailed Annotation

6x5 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_88269.4

Basepair signature

cWW-tWW-cSH-tWH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

3BBX|1|B|U|1712
3BBX|1|B|A|1713
3BBX|1|B|U|1714
3BBX|1|B|G|1715
3BBX|1|B|U|1716
3BBX|1|B|A|1717
3BBX|1|B|G|1718
*
3BBX|1|B|U|1742
3BBX|1|B|G|1743
3BBX|1|B|A|1744
3BBX|1|B|A|1745
3BBX|1|B|A|1746

Current chains

Chain B

23S ribosomal RNA

Nearby chains