IL_3BBX_074

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

3BBX|1|B|A|1938, 3BBX|1|B|U|1944

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3BBX_074 not in the Motif Atlas

Geometric match to IL_7A0S_072

Geometric discrepancy: 0.1307

The information below is about IL_7A0S_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_04332.3

Basepair signature

cWW-L-R-L-cWW-L-L-R-L-R-L

Number of instances in this motif group

2

Unit IDs

3BBX|1|B|C|1934
3BBX|1|B|G|1935
3BBX|1|B|A|1936
3BBX|1|B|A|1937
3BBX|1|B|A|1938
3BBX|1|B|U|1939
3BBX|1|B|U|1940
3BBX|1|B|C|1941
3BBX|1|B|C|1942
3BBX|1|B|U|1943
3BBX|1|B|U|1944
3BBX|1|B|G|1945
*
3BBX|1|B|C|1961
3BBX|1|B|C|1962
3BBX|1|B|U|1963
3BBX|1|B|G|1964

Current chains

Chain B

23S ribosomal RNA

Nearby chains