IL_3BBX_079

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

3BBX|1|B|G|2238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3BBX_079 not in the Motif Atlas

Homologous match to IL_5J7L_325

Geometric discrepancy: 0.1237

The information below is about IL_5J7L_325

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_85599.2

Basepair signature

cWW-tHS-cWW

Number of instances in this motif group

9

Unit IDs

3BBX|1|B|U|2081
3BBX|1|B|A|2082
3BBX|1|B|G|2083
*
3BBX|1|B|U|2236
3BBX|1|B|G|2237
3BBX|1|B|G|2238
3BBX|1|B|G|2239

Current chains

Chain B

23S ribosomal RNA

Nearby chains

Chain Z

50S ribosomal protein L31