3D structure

PDB id
3BBX (explore in PDB, NAKB, or RNA 3D Hub)
Description
The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex
Experimental method
ELECTRON MICROSCOPY
Resolution
10 Å

Loop

Sequence
CUGAAG*CGUG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3BBX_102 not in the Motif Atlas
Homologous match to IL_5J7L_351
Geometric discrepancy: 0.1178
The information below is about IL_5J7L_351
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_29471.1
Basepair signature
cWW-cWW-L-tHS-L-cWW
Number of instances in this motif group
1

Unit IDs

3BBX|1|B|C|2806
3BBX|1|B|U|2807
3BBX|1|B|G|2808
3BBX|1|B|A|2809
3BBX|1|B|A|2810
3BBX|1|B|G|2811
*
3BBX|1|B|C|2889
3BBX|1|B|G|2890
3BBX|1|B|U|2891
3BBX|1|B|G|2892

Current chains

Chain B
23S ribosomal RNA

Nearby chains

Chain 0
50S ribosomal protein L32
Chain D
50S ribosomal protein L3

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.15 s