IL_3BBX_109

3D structure

PDB id

3BBX (explore in PDB, NAKB, or RNA 3D Hub)

Description

The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex

Experimental method

ELECTRON MICROSCOPY

Resolution

10 Å

Loop

Sequence

GUGUAGGAUAGGUGGGAGGCUUUGAAG*UGGAGCCGACCUUGAAAUACCACCC

Length

52 nucleotides

Bulged bases

3BBX|1|B|U|2111, 3BBX|1|B|G|2112, 3BBX|1|B|U|2113, 3BBX|1|B|A|2114, 3BBX|1|B|G|2115, 3BBX|1|B|G|2116, 3BBX|1|B|A|2117, 3BBX|1|B|U|2118, 3BBX|1|B|A|2119, 3BBX|1|B|G|2120, 3BBX|1|B|G|2121, 3BBX|1|B|U|2122, 3BBX|1|B|G|2123, 3BBX|1|B|G|2124, 3BBX|1|B|G|2125, 3BBX|1|B|A|2126, 3BBX|1|B|G|2127, 3BBX|1|B|G|2128, 3BBX|1|B|C|2129, 3BBX|1|B|U|2130, 3BBX|1|B|U|2131, 3BBX|1|B|U|2132, 3BBX|1|B|G|2133, 3BBX|1|B|G|2157, 3BBX|1|B|A|2158, 3BBX|1|B|G|2159, 3BBX|1|B|C|2160, 3BBX|1|B|C|2161, 3BBX|1|B|G|2162, 3BBX|1|B|A|2163, 3BBX|1|B|C|2164, 3BBX|1|B|C|2165, 3BBX|1|B|U|2166, 3BBX|1|B|U|2167, 3BBX|1|B|G|2168, 3BBX|1|B|A|2169, 3BBX|1|B|A|2170, 3BBX|1|B|A|2171, 3BBX|1|B|U|2172, 3BBX|1|B|A|2173, 3BBX|1|B|C|2174, 3BBX|1|B|C|2175, 3BBX|1|B|A|2176, 3BBX|1|B|C|2177, 3BBX|1|B|C|2178

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3BBX|1|B|G|2110
3BBX|1|B|U|2111
3BBX|1|B|G|2112
3BBX|1|B|U|2113
3BBX|1|B|A|2114
3BBX|1|B|G|2115
3BBX|1|B|G|2116
3BBX|1|B|A|2117
3BBX|1|B|U|2118
3BBX|1|B|A|2119
3BBX|1|B|G|2120
3BBX|1|B|G|2121
3BBX|1|B|U|2122
3BBX|1|B|G|2123
3BBX|1|B|G|2124
3BBX|1|B|G|2125
3BBX|1|B|A|2126
3BBX|1|B|G|2127
3BBX|1|B|G|2128
3BBX|1|B|C|2129
3BBX|1|B|U|2130
3BBX|1|B|U|2131
3BBX|1|B|U|2132
3BBX|1|B|G|2133
3BBX|1|B|A|2134
3BBX|1|B|A|2135
3BBX|1|B|G|2136
*
3BBX|1|B|U|2155
3BBX|1|B|G|2156
3BBX|1|B|G|2157
3BBX|1|B|A|2158
3BBX|1|B|G|2159
3BBX|1|B|C|2160
3BBX|1|B|C|2161
3BBX|1|B|G|2162
3BBX|1|B|A|2163
3BBX|1|B|C|2164
3BBX|1|B|C|2165
3BBX|1|B|U|2166
3BBX|1|B|U|2167
3BBX|1|B|G|2168
3BBX|1|B|A|2169
3BBX|1|B|A|2170
3BBX|1|B|A|2171
3BBX|1|B|U|2172
3BBX|1|B|A|2173
3BBX|1|B|C|2174
3BBX|1|B|C|2175
3BBX|1|B|A|2176
3BBX|1|B|C|2177
3BBX|1|B|C|2178
3BBX|1|B|C|2179

Current chains

Chain B

23S ribosomal RNA

Nearby chains