IL_3BO3_006

3D structure

PDB id

3BO3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A relaxed active site following exon ligation by a group I intron

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

GAG*CC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3BO3_006 not in the Motif Atlas

Geometric match to IL_6DTD_003

Geometric discrepancy: 0.1423

The information below is about IL_6DTD_003

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.4

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

68

Unit IDs

3BO3|1|B|G|128
3BO3|1|B|A|129
3BO3|1|B|G|130
*
3BO3|1|B|C|177
3BO3|1|B|C|178

Current chains

Chain B

Group I intron P9

Nearby chains

Chain C

RNA (5'-R(*AP*AP*GP*CP*CP*AP*CP*AP*CP*AP*AP*AP*CP*CP*AP*G)-3')

Chain D

RNA (5'-R(*CP*AP*UP*AP*CP*GP*GP*CP*C)-3')