IL_3BO3_007
3D structure
- PDB id
- 3BO3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- A relaxed active site following exon ligation by a group I intron
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.4 Å
Loop
- Sequence
- AGACGGCACCC*GAAGGCAU
- Length
- 19 nucleotides
- Bulged bases
- 3BO3|1|B|C|171, 3BO3|1|B|A|172
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3BO3_007 not in the Motif Atlas
- Geometric match to IL_1U6B_008
- Geometric discrepancy: 0.11
- The information below is about IL_1U6B_008
- Detailed Annotation
- Pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_43467.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-cWW-L-L-R-L
- Number of instances in this motif group
- 1
Unit IDs
3BO3|1|B|A|134
3BO3|1|B|G|135
3BO3|1|B|A|136
3BO3|1|B|C|137
3BO3|1|B|G|138
3BO3|1|B|G|139
3BO3|1|B|C|140
3BO3|1|B|A|141
3BO3|1|B|C|142
3BO3|1|B|C|143
3BO3|1|B|C|144
*
3BO3|1|B|G|166
3BO3|1|B|A|167
3BO3|1|B|A|168
3BO3|1|B|G|169
3BO3|1|B|G|170
3BO3|1|B|C|171
3BO3|1|B|A|172
3BO3|1|B|U|173
Current chains
- Chain B
- Group I intron P9
Nearby chains
- Chain C
- RNA (5'-R(*AP*AP*GP*CP*CP*AP*CP*AP*CP*AP*AP*AP*CP*CP*AP*G)-3')
- Chain D
- RNA (5'-R(*CP*AP*UP*AP*CP*GP*GP*CP*C)-3')
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