IL_3BO3_008

3D structure

PDB id

3BO3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

A relaxed active site following exon ligation by a group I intron

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CUAAG*UAUG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3BO3_008 not in the Motif Atlas

Geometric match to IL_3IGI_012

Geometric discrepancy: 0.3043

The information below is about IL_3IGI_012

Detailed Annotation

Receptor of 11-nt loop-receptor motif

Broad Annotation

Loop-receptor motif

Motif group

IL_95104.1

Basepair signature

cWW-tWH-cWW-cSH-cWW

Number of instances in this motif group

7

Unit IDs

3BO3|1|B|C|147
3BO3|1|B|U|148
3BO3|1|B|A|149
3BO3|1|B|A|150
3BO3|1|B|G|151
*
3BO3|1|B|U|160
3BO3|1|B|A|161
3BO3|1|B|U|162
3BO3|1|B|G|163

Current chains

Chain B

Group I intron P9

Nearby chains