IL_3BO4_004
3D structure
- PDB id
- 3BO4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- A relaxed active site following exon ligation by a group I intron
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.33 Å
Loop
- Sequence
- CUAAG*UAUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3BO4_004 not in the Motif Atlas
- Geometric match to IL_1U6B_003
- Geometric discrepancy: 0.0705
- The information below is about IL_1U6B_003
- Detailed Annotation
- Receptor of 11-nt loop-receptor motif
- Broad Annotation
- Loop-receptor motif
- Motif group
- IL_95104.1
- Basepair signature
- cWW-tWH-cWW-cSH-cWW
- Number of instances in this motif group
- 7
Unit IDs
3BO4|1|B|C|61
3BO4|1|B|U|62
3BO4|1|B|A|63
3BO4|1|B|A|64
3BO4|1|B|G|65
*
3BO4|1|B|U|80
3BO4|1|B|A|81
3BO4|1|B|U|82
3BO4|1|B|G|83
Current chains
- Chain B
- Group I intron P9
Nearby chains
- Chain C
- DNA/RNA (5'-R(*AP*AP*GP*CP*CP*AP*CP*AP*CP*AP*AP*AP*CP*CP*A)-D(P*DG)-3')
- Chain D
- DNA/RNA (5'-R(*CP*A)-D(P*DU)-R(P*AP*CP*GP*GP*CP*C)-3')
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